Terminology Service for NFDI4Health
chromatin interaction analysis by paired-end tag sequencing assay
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http://purl.obolibrary.org/obo/OBI_0001848
An assay that incorporates chromatin immunoprecipitation (ChIP)-based enrichment, chromatin proximity ligation, Paired-End Tags, and high-throughput sequencing to determine de novo long-range chromatin interactions genome-wide.
Term info
Label
chromatin interaction analysis by paired-end tag sequencing assay
alternative term
ChIA-PET assay, ChIA-PET
definition source
url:http://en.wikipedia.org/wiki/ChIA-PET
editor preferred term
chromatin interaction analysis by paired-end tag sequencing assay
example of usage
Zhang, et al. ChIA-PET analysis of transcriptional chromatin interactions. Methods. 2012 Nov;58(3):289-99. [PMID:22926262]
has curation status
http://purl.obolibrary.org/obo/IAO_0000120
term editor
Venkat Malladi, Chris Stoeckert, Jie Zheng
Term relations
Subclass of:
- nuclear ligation assay
- sequencing assay
- has part some chromosome conformation capture assay
- has part some sequencing assay
- achieves_planned_objective some chromosome conformation identification objective
- has_specified_output some DNA sequence data
- realizes some (
function and
inheres in some DNA sequencer) and has_specified_input some DNA sequencer - has part some chromatin immunoprecipitation
- realizes some (
evaluant role and
role of some protein-containing complex) and has_specified_input some (
protein-containing complex and
has role some evaluant role)