Terminology Service for NFDI4Health
RNA Annotation and Mapping of Promoters for the Analysis of Gene Expression assay
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http://purl.obolibrary.org/obo/OBI_0001864
An transcription profiling assay that identifies transcription start sites (TSS), the quantification of their expression and the characterization of their transcripts using high throughput sequencing.
Term info
Label
RNA Annotation and Mapping of Promoters for the Analysis of Gene Expression assay
alternative term
RAMPAGE
definition source
PMID:22936248
editor preferred term
RNA Annotation and Mapping of Promoters for the Analysis of Gene Expression assay
example of usage
Batut et al. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Genome Research. 2013 Jan;23(1):169-80. [PMID:22936248]
has curation status
http://purl.obolibrary.org/obo/IAO_0000120
term editor
Venkat Malladi, Chris Stoeckert, Jie Zheng
Term relations
Subclass of:
- transcription profiling assay
- sequencing assay
- has part some sequencing assay
- has part some library preparation
- has part some non specific enzymatic cleavage
- has_specified_output some DNA sequence data
- achieves_planned_objective some transcription start site identification objective
- realizes some (
function and
inheres in some DNA sequencer) and has_specified_input some DNA sequencer - realizes some (
evaluant role and
role of some RNA extract) and has_specified_input some (
RNA extract and
has role some evaluant role)