Terminology Service for NFDI4Health
Carbon-copy chromosome conformation capture assay
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http://purl.obolibrary.org/obo/OBI_0001919
An assay that measures the organization of chromosomes at the genome-wide scale.
Term info
Label
Carbon-copy chromosome conformation capture assay
alternative term
5C assay, 5C
definition source
PMID:16954542
editor preferred term
Carbon-copy chromosome conformation capture assay
example of usage
van Berkum et al. Determining spatial chromatin organization of large genomic regions using 5C technology. Methods Mol Biol (2009) vol. 567 pp. 189-213 [PMID:19588094]
has curation status
http://purl.obolibrary.org/obo/IAO_0000120
term editor
Venkat Malladi, Chris Stoeckert, Jie Zheng
Term relations
Subclass of:
- polymerase chain reaction assay
- DNA sequencing assay
- achieves_planned_objective some chromosome conformation identification objective
- has part some library preparation
- has part some DNA sequencing assay
- has_specified_output some DNA sequence data
- realizes some (
evaluant role and
role of some DNA extract) and has_specified_input some (
DNA extract and
has role some evaluant role) - has part some immunoprecipitation
- realizes some (
function and
inheres in some DNA sequencer) and has_specified_input some DNA sequencer - has part some multiplex ligation-mediated amplification
- has part some specific enzymatic cleavage